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Department of Neurobiology   Dept. of Neurobiology, Bielefeld University


Bielefeld University Library   Bielefeld University Library


   University Library Center NRW, Germany    University Library Center NRW, Germany


Contents
show floating TOC
An Introduction to XML in Neuroscience - Sharon Crook
An Introduction to NeuroML - Fred Howell
Aim
The challenges
Why XML?
Why not XML?
Components of a simulation model
Aiming towards declarative model specifications
Publishing models
Why is standardization for neural models hard?
Union or intersection?
What is "NeuroML"?
Other XML languages
Practicalities
The NeuroML Development Kit
Example network definition
Schema format
The place of embedded scripts in model descriptions
Future plans
NeuroML for Model Specification in ChannelDB and GENESIS - David Beeman
Introduction
An example
The ChannelDB solution
NeuroML representation of the K channel
Some classes defined for ChannelDB
Unfinished business and open questions
NeuroML and GENESIS 3 development plans
MorphML: An XML Application for Neuronal Morphology Data - Sharon Crook
Introduction
An example
Applications of MorphML
The practical use of XML specifications- Padraig Gleeson
Introduction
Linking NeuroML, MorphML, and ChannelML specifications
Cell morphology
Cell processes
neuroConstruct: An application to facilitate handling of XML specifications
Current Issues and Future Development: A Workshop Summary - Sharon Crook
References
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